Multi-Domain Brain Vessel Segmentation Through Feature Disentanglement

Francesco Galati1Orcid, Daniele Falcetta1Orcid, Rosa Cortese2Orcid, Ferran Prados3,4,5Orcid, Ninon Burgos6Orcid, Maria A. Zuluaga1,7Orcid
1: Data Science, EURECOM, 2: Department of Medicine, Surgery and Neuroscience, University of Siena, 3: Centre for Medical Image Computing, Department of Medical Physics and Bioengineering, University College London, 4: Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, 5: E-health Center, Universitat Oberta de Catalunya, 6: Sorbonne Université, Paris Brain Institute, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié Salpêtrière, Paris, FR, 7: School of Biomedical Engineering & Imaging Sciences, King's College London
Publication date: 2025/09/09
https://doi.org/10.59275/j.melba.2025-4582
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Abstract

The intricate morphology of brain vessels poses significant challenges for automatic segmentation models, which usually focus on a single imaging modality. However, accurately treating brain-related conditions requires a comprehensive understanding of the cerebrovascular tree regardless of the specific acquisition procedure. Through image-to-image translation, our framework effectively segments brain arteries and veins in various datasets, while avoiding domain-specific model design and data harmonization between the source and the target domain. This is accomplished by employing disentanglement techniques to independently manipulate different image properties, allowing to move from one domain to the other in a label-preserving manner. Specifically, we focus on the manipulation of vessel appearances during adaptation, while preserving spatial information such as shapes and locations, which are crucial for correct segmentation. Our evaluation demonstrates efficacy in bridging large and varied domain gaps across different medical centers, image modalities, and vessel types. Additionally, we conduct ablation studies on the optimal number of required annotations and other architectural choices. The results obtained highlight the robustness and versatility of our framework, demonstrating the potential of domain adaptation methodologies to perform cerebrovascular image segmentation accurately in multiple scenarios.

Keywords

Cerebrovascular segmentation · Image-to-Image translation · Multi-domain segmentation · Semi-supervised domain adaptation

Bibtex @article{melba:2025:021:galati, title = "Multi-Domain Brain Vessel Segmentation Through Feature Disentanglement", author = "Galati, Francesco and Falcetta, Daniele and Cortese, Rosa and Prados, Ferran and Burgos, Ninon and Zuluaga, Maria A.", journal = "Machine Learning for Biomedical Imaging", volume = "3", issue = "September 2025 issue", year = "2025", pages = "477--495", issn = "2766-905X", doi = "https://doi.org/10.59275/j.melba.2025-4582", url = "https://melba-journal.org/2025:021" }
RISTY - JOUR AU - Galati, Francesco AU - Falcetta, Daniele AU - Cortese, Rosa AU - Prados, Ferran AU - Burgos, Ninon AU - Zuluaga, Maria A. PY - 2025 TI - Multi-Domain Brain Vessel Segmentation Through Feature Disentanglement T2 - Machine Learning for Biomedical Imaging VL - 3 IS - September 2025 issue SP - 477 EP - 495 SN - 2766-905X DO - https://doi.org/10.59275/j.melba.2025-4582 UR - https://melba-journal.org/2025:021 ER -

2025:021 cover