A COCO-Formatted Instance-Level Dataset for Plasmodium Falciparum Detection in Giemsa-Stained Blood Smears
Frauke Wilm1,2
, Luis Carlos Rivera Monroy1,2
, Mathias Öttl1,2
, Lukas Mürdter1, Leonid Mill1,2
, Andreas Maier2
1: MIRA Vision Microscopy GmbH, 73037 Göppingen, Germany, 2: Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität (FAU) Erlangen-Nürnberg, Erlangen, Germany
Publication date: 2025/12/31
https://doi.org/10.59275/j.melba.2025-46d9
Abstract
Accurate detection of Plasmodium falciparum in Giemsa-stained blood smears is an essential component of reliable malaria diagnosis, especially in developing countries. Deep learning-based object detection methods have demonstrated strong potential for automated Malaria diagnosis, but their adoption is limited by the scarcity of datasets with detailed instance-level annotations. In this work, we present an enhanced version of the publicly available NIH malaria dataset, with detailed bounding box annotations in COCO format to support object detection training. We validated the revised annotations by training a Faster R-CNN model to detect infected and non-infected red blood cells, as well as white blood cells. Cross-validation on the original dataset yielded F1,scores of up to 0.88 for infected cell detection. These results underscore the importance of annotation volume and consistency, and demonstrate that automated annotation refinement combined with targeted manual correction can produce training data of sufficient quality for robust detection performance. The updated annotations set is publicly available via Zenodo: https://doi.org/10.5281/zenodo.17514694
Keywords
Malaria · Plasmodium Falciparum · Thin Blood Smear · NIH · COCO
Bibtex
@article{melba:2025:040:wilm,
title = "A COCO-Formatted Instance-Level Dataset for Plasmodium Falciparum Detection in Giemsa-Stained Blood Smears",
author = "Wilm, Frauke and Rivera Monroy, Luis Carlos and Öttl, Mathias and Mürdter, Lukas and Mill, Leonid and Maier, Andreas",
journal = "Machine Learning for Biomedical Imaging",
volume = "3",
issue = "Special Issue on Open Data at MICCAI 2024–2025",
year = "2025",
pages = "849--855",
issn = "2766-905X",
doi = "https://doi.org/10.59275/j.melba.2025-46d9",
url = "https://melba-journal.org/2025:040"
}
RIS
TY - JOUR
AU - Wilm, Frauke
AU - Rivera Monroy, Luis Carlos
AU - Öttl, Mathias
AU - Mürdter, Lukas
AU - Mill, Leonid
AU - Maier, Andreas
PY - 2025
TI - A COCO-Formatted Instance-Level Dataset for Plasmodium Falciparum Detection in Giemsa-Stained Blood Smears
T2 - Machine Learning for Biomedical Imaging
VL - 3
IS - Special Issue on Open Data at MICCAI 2024–2025
SP - 849
EP - 855
SN - 2766-905X
DO - https://doi.org/10.59275/j.melba.2025-46d9
UR - https://melba-journal.org/2025:040
ER -