A multi-site loiasis dataset of whole blood videos

Linda Djune-Yemeli1, Rella Zoleko-Manego2, Charles B. Delahunt3,4, Donald F. Fankam1, Yannick Y. Nzeuhang1, Jean G. Bopda1, Mbakam S. Laetitia1, Yves A. Balog1, Steve M. Tchana1, Ghyslain Mombo-Ngoma2,5, Michael Ramharter2,5,6, Maria Diaz de Leon Derby7, Zaina L. Moussa7, Ethan Spencer4, Dipayan Banik4, Matthew D. Keller4, Karla N. Fisher8,9, Daniel A. Fletcher7, Isaac I. Bogoch8,9,10, Anne-Laure Le Ny4, Saskia Deda David2,5, Joseph Kamgno1
1: Higher Institute for Scientific and Medical Research (ISM), Yoaoundé, Cameroon, 2: Centre de Recherches Médicale de Lambaréné, Gabon (CERMEL), 3: University of Washington, Seattle, Washington, 4: Formerly at Global Health Labs, Inc, Bellevue, Washington (ceased operations in 2025), 5: Center for Tropical Medicine Bernhard Nocht Institute for Tropical Medicine & Dept. of Medicine University Medical Center Hamburg-Eppendorf (BNITM), 6: German Center for Infection Research, Partner Site Hamburg-Lübeck-Borstel-Riems, 7: Department of Bioengineering, University of California, Berkeley, Berkeley, California, 8: Division of General Internal Medicine, Toronto General Hospital, University Health Network, Toronto, Canada, 9: Division of Infectious Diseases, Toronto General Hospital, University Health Network, Toronto, Canada, 10: Department of Medicine, University of Toronto, Toronto, Canada
Publication date: 2026/09/21
https://doi.org/10.59275/j.melba.2026-b66d
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Abstract

Loiasis is a blood-borne filarial infection under consideration for inclusion in the WHO’s priority list of Neglected Tropical Diseases. In addition to its direct impact on human health, loiasis frequently occurs as a co-infection with other filarial diseases, including onchocerciasis (river blindness) and lymphatic filariasis (LF, elephantiasis). This overlapping geographic distribution seriously hinders mass drug administration (MDA) with ivermectin (IVM) for onchocerciasis and LF control, because individuals with Loa loa microfilarial (mf) loads exceeding 30,000 mf/mL are at high risk of developing severe adverse events, including coma and death, following IVM treatment. Therefore, safe MDA in loiasis co-endemic areas requires active detection and exclusion of high L. loa mf individuals from treatment, the so-called Test and Not Treat (TaNT) strategy. Automated, AI-driven diagnostics have shown strong potential to enhance TaNT implementation and fill a crucial care need for underserved populations, yet important performance limitations remain. To support AI research for the pressing health care needs of filarial diseases, we release this first-of-its-kind dataset to enable development of AI algorithms for detecting L. loa in whole blood samples. The dataset includes over 33,000 videos of whole blood in capillaries, in 4705 sessions (7 videos per session) from 1948 patients, captured by NTDscope portable imaging devices during four studies in 2023 and 2025 in Cameroon and Gabon. The videos contain a range of L. loa microfilariae counts and negative cases, as well as some cases with Mansonella perstans, another tropical filarial parasite. The metadata include expert microfilariae counts from Giemsa-stained blood films for each patient.

Keywords

Loa loa · Mansonella · neglected tropical disease · mobile microscopy · machine learning

Bibtex @article{melba:2026:040:djune-yemeli, title = "A multi-site loiasis dataset of whole blood videos", author = "Djune-Yemeli, Linda and Zoleko-Manego, Rella and Delahunt, Charles B. and Fankam, Donald F. and Nzeuhang, Yannick Y. and Bopda, Jean G. and Laetitia, Mbakam S. and Balog, Yves A. and Tchana, Steve M. and Mombo-Ngoma, Ghyslain and Ramharter, Michael and Diaz de Leon Derby, Maria and Moussa, Zaina L. and Spencer, Ethan and Banik, Dipayan and Keller, Matthew D. and Fisher, Karla N. and Fletcher, Daniel A. and Bogoch, Isaac I. and Le Ny, Anne-Laure and Deda David, Saskia and Kamgno, Joseph", journal = "Machine Learning for Biomedical Imaging", volume = "2026", issue = "Special Issue on MICCAI Open Data 2026", year = "2026", pages = "782--791", issn = "2766-905X", doi = "https://doi.org/10.59275/j.melba.2026-b66d", url = "https://melba-journal.org/2026:040" }
RISTY - JOUR AU - Djune-Yemeli, Linda AU - Zoleko-Manego, Rella AU - Delahunt, Charles B. AU - Fankam, Donald F. AU - Nzeuhang, Yannick Y. AU - Bopda, Jean G. AU - Laetitia, Mbakam S. AU - Balog, Yves A. AU - Tchana, Steve M. AU - Mombo-Ngoma, Ghyslain AU - Ramharter, Michael AU - Diaz de Leon Derby, Maria AU - Moussa, Zaina L. AU - Spencer, Ethan AU - Banik, Dipayan AU - Keller, Matthew D. AU - Fisher, Karla N. AU - Fletcher, Daniel A. AU - Bogoch, Isaac I. AU - Le Ny, Anne-Laure AU - Deda David, Saskia AU - Kamgno, Joseph PY - 2026 TI - A multi-site loiasis dataset of whole blood videos T2 - Machine Learning for Biomedical Imaging VL - 2026 IS - Special Issue on MICCAI Open Data 2026 SP - 782 EP - 791 SN - 2766-905X DO - https://doi.org/10.59275/j.melba.2026-b66d UR - https://melba-journal.org/2026:040 ER -

2026:040 cover