Volume 2

https://doi.org/10.59275/j.melba.2-5caa

45 papers


Dimensionality Reduction and Nearest Neighbors for Improving Out-of-Distribution Detection in Medical Image Segmentation cover file

Dimensionality Reduction and Nearest Neighbors for Improving Out-of-Distribution Detection in Medical Image Segmentation

2024/10/23
UNSURE2023 special issue

McKell WoodlandThe University of Texas MD Anderson Cancer Center, Houston, TX, USA
Rice University, Houston, TX, USA
et al.

McKell WoodlandThe University of Texas MD Anderson Cancer Center, Houston, TX, USA
Rice University, Houston, TX, USA
, Nihil PatelThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Austin CasteloThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Mais Al TaieThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Mohamed EltaherThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Joshua P. YungThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Tucker J. NethertonThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Tiffany L. CalderoneThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Jessica I. SanchezThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Darrel W. CleereHouston Methodist Hospital, Houston, TX, USA, Ahmed ElsaieyHouston Methodist Hospital, Houston, TX, USA, Nakul GuptaHouston Methodist Hospital, Houston, TX, USA, David VictorHouston Methodist Hospital, Houston, TX, USA, Laura BerettaThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Ankit B. PatelBaylor College of Medicine, Houston, TX, USA
Rice University, Houston, TX, USA
, Kristy K. BrockThe University of Texas MD Anderson Cancer Center, Houston, TX, USA

Counterfactual Explanations for Medical Image Classification and Regression using Diffusion Autoencoder cover file

Counterfactual Explanations for Medical Image Classification and Regression using Diffusion Autoencoder

2024/09/30
iMIMIC 2023 special issue

Matan AtadDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany
Institute for Artificial Intelligence and Computer Science in Medicine, Technical University of Munich, Germany
, David SchinzDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany, Hendrik MoellerDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany
Institute for Artificial Intelligence and Computer Science in Medicine, Technical University of Munich, Germany
, Robert GrafDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany
Institute for Artificial Intelligence and Computer Science in Medicine, Technical University of Munich, Germany
, Benedikt WiestlerDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany
AI for Image-Guided Diagnosis and Therapy, Technical University of Munich, Germany
, Daniel RueckertInstitute for Artificial Intelligence and Computer Science in Medicine, Technical University of Munich, Germany, Nassir NavabComputer Aided Medical Procedures, Technical University of Munich, Germany, Jan S. KirschkeDepartment of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Germany, Matthias KeicherComputer Aided Medical Procedures, Technical University of Munich, Germany

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI cover file

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

2024/08/31
August 2024 issue

Nancy R. NewlinDepartment of Computer Science, Vanderbilt University, Nashville, TN et al.

Nancy R. NewlinDepartment of Computer Science, Vanderbilt University, Nashville, TN, Kurt SchillingDepartment of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Serge KoudoroIndiana University Bloomington, Bloomington, IN, Bramsh Qamar ChandioMark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, Los Angeles, CA, Praitayini KanakarajDepartment of Computer Science, Vanderbilt University, Nashville, TN, Daniel MoyerDepartment of Computer Science, Vanderbilt University, Nashville, TN, Claire E. KellyDevelopmental Imaging, Murdoch Children’s Research Institute, Melbourne, Australia
Victorian Infant Brain Studies (VIBeS), Murdoch Children’s Research Institute, Melbourne, Australia
Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Melbourne, Australia
, Sila GencDevelopmental Imaging, Murdoch Children’s Research Institute, Melbourne, Australia
Neuroscience Advanced Clinical Imaging Service (NACIS), Department of Neurosurgery, Royal Children’s Hospital, Melbourne, Australia
, Jian ChenDevelopmental Imaging, Murdoch Children’s Research Institute, Melbourne, Australia, Joseph Yuan-Mou YangDevelopmental Imaging, Murdoch Children’s Research Institute, Melbourne, Australia
Neuroscience Advanced Clinical Imaging Service (NACIS), Department of Neurosurgery, Royal Children’s Hospital, Melbourne, Australia
Neuroscience Research, Murdoch Children’s Research Institute, Melbourne, Australia
Department of Pediatrics, University of Melbourne, Melbourne, Australia
, Ye WuSchool of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China, Yifei HeSchool of Computer Science and Technology, Nanjing University of Science and Technology, Nanjing, China, Jiawei ZhangCollege of Information Engineering, Zhejiang University of Technology, Hangzhou, China, Qingrun ZengSchool of Information and Communication Engineering, University of Electronic Science and Technology of China, Chengdu, China, Fan ZhangSchool of Information and Communication Engineering, University of Electronic Science and Technology of China, Chengdu, China, Nagesh AdluruWaisman Center, Department of Radiology, University of Wisconsin, Madison, Vishwesh NathNVIDIA, Nashville, TN, USA, Sudhir PathakLearning Research and Development Center, University of Pittsburgh, Walter SchneiderLearning Research and Development Center, University of Pittsburgh, Anurag GadeBrigham and Women’s Hospital, Boston, Yogesh RathiBrigham and Women’s Hospital, Harvard Medical School, Boston, Tom HendriksDepartment of Computer Science and Mathematics, Eindhoven University of Technology, Netherlands, Anna VilanovaDepartment of Computer Science and Mathematics, Eindhoven University of Technology, Netherlands, Maxime ChamberlandDepartment of Computer Science and Mathematics, Eindhoven University of Technology, Netherlands, Tomasz PieciakLPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain
Sano Centre for Computational Medicine, 30-054 Kraków, Poland
, Dominika CiupekSano Centre for Computational Medicine, 30-054 Kraków, Poland, Antonio Tristán-VegaLPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain, Santiago Aja-FernándezLPI, ETSI Telecomunicación, Universidad de Valladolid, Castilla y León, Spain, Maciej MalawskiSano Centre for Computational Medicine, 30-054 Kraków, Poland, Gani OuedraogoAix-Marseille Université, Marseille, France, Julia MachnioSano Centre for Computational Medicine, 30-054 Kraków, Poland, Christian EwertAI in Medical Imaging, German Center for Neurodegenerative Diseases (DZNE), Paul M. ThompsonMark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, Los Angeles, CA, Neda JahanshadMark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, Los Angeles, CA, Eleftherios GaryfallidisIndiana University Bloomington, Bloomington, IN, Bennett A. LandmanDepartment of Computer Science, Vanderbilt University, Nashville, TN
Department of Radiology and Radiological Sciences, Vanderbilt University Medical Center
Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, TN, USA
Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA

Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts cover file

Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts

2024/07/30
July 2024 issue

Lisa HemforthSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France et al.

Lisa HemforthSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Baptiste Couvy-DuchesneSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France
Institute for Molecular Bioscience, the University of Queensland, Brisbane, 4072, Australia
, Kevin De MatosSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Camille BrianceauSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Matthieu JoulotSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Tobias BanaschewskiDepartment of Child and Adolescent Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, Mannheim, 68159, Germany , Arun L.W. BokdeDiscipline of Psychiatry, School of Medicine and Trinity College Institute of Neuroscience, Trinity College Dublin, Dublin, Ireland , Sylvane DesrivièresCentre for Popula tion Neuroscience and Precision Medicine (PONS), Institute of Psychiatry, Psychology & Neuroscience, SGDP Centre, King’s College London, London, United Kingdom , Herta FlorgDepartment of Psychology, School of Social Sciences, University of Mannheim, Mannheim, 68131, Germany , Antoine GrigisNeuroSpin, CEA, Université Paris-Saclay, Gif-sur-Yvette, France , Hugh GaravanDepartments of Psychiatry and Psychology, University of Vermont, Burlington, Vermont, 05405, USA , Penny GowlandSir Peter Mansfield Imaging Centre School of Physics and Astronomy, Univer sity of Nottingham, University Park, Nottingham, United Kingdom , Andreas HeinzDepartment of Psychiatry and Psychotherapy CCM, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany , Rüdiger BrühlPhysikalisch-Technische Bundesanstalt (PTB), Braun schweig and Berlin, Germany , Jean-Luc MartinotInstitut National de la Santé et de la Recherche Médicale, INSERM U 1299 ”Trajectoires développementales & psychiatrie”, University Paris-Saclay, CNRS; Ecole Normale Supérieure Paris-Saclay, Centre Borelli, Gif-sur-Yvette, France , Marie-Laure Paillère MartinotInstitut National de la Santé et de la Recherche Médicale, INSERM U 1299 ”Trajectoires développementales & psychiatrie”, University Paris-Saclay, CNRS; Ecole Normale Supérieure Paris-Saclay, Centre Borelli, Gif-sur-Yvette, France
Sorbonne University, Department of Child and Adolescent Psychiatry, Pitié-Salpêtrière Hospital, Paris, France
, Eric ArtigesnPsychiatry Department, EPS Barthélémy Durand, Etampes, France , Dimitri PapadopoulosNeuroSpin, CEA, Université Paris-Saclay, Gif-sur-Yvette, France , Herve LemaitreiInstitut des Maladies Neurodégénératives, UMR 5293, CNRS, CEA, Université de Bordeaux, Bordeaux, France , Tomas PausrDepartments of Psychiatry and Psychology, University of Toronto, Toronto, Ontario, Canada , Luise PoustkaDepartment of Child and Adolescent Psychiatry and Psychotherapy, University Medical Centre Göttingen, Göttingen, Germany , Sarah HohmanaSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Nathalie HolzDepartment of Child and Adolescent Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, Mannheim, 68159, Germany , Juliane H. FröhnerDepartment of Psychiatry and Neuroimaging Center, Technische Univer sität Dresden, Dresden, Germany , Michael N. SmolkaDepartment of Psychiatry and Neuroimaging Center, Technische Univer sität Dresden, Dresden, Germany , Nilakshi VaidyaCentre for Population Neuroscience and Stratified Medicine (PONS), Department of Psychiatry and Neuroscience, Charité Universitätsmedizin Berlin, Berlin, Germany , Henrik WalterDepartment of Psychiatry and Psychotherapy CCM, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany , Robert WhelanSchool of Psychology and Global Brain Health Institute, Trinity College Dublin, Dublin, Ireland , Gunter SchumannCentre for Population Neuroscience and Stratified Medicine (PONS), Department of Psychiatry and Neuroscience, Charité Universitätsmedizin Berlin, Berlin, Germany
Centre for Population Neuroscience and Precision Medicine (PONS), Institute for Science and Technology of Brain-inspired Intelligence (ISTBI), Fudan Uni versity, Shanghai, China
, Christian BüchelDepartment of Systems Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany , JB PolineDepartment of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada aa Department of Child and Adolescent Psychiatry, Psychotherapy and Psychosomatics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany, Bernd IttermanPhysikalisch-Technische Bundesanstalt (PTB), Braun schweig and Berlin, Germany , Vincent FrouinNeuroSpin, CEA, Université Paris-Saclay, Gif-sur-Yvette, France , Alexandre MartinSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France, Claire CuryUniversity of Rennes, Inria, CNRS, Inserm, IRISA UMR 6074, Empenn ERL U-1228, Rennes, 35000, France , IMAGEN study group , Olivier ColliotSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, F-75013, Paris, France

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation cover file

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation

2024/06/14
June 2024 issue

Sophie LoizillonSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France et al.

Sophie LoizillonSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France, Simona BottaniSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France, Stéphane MabilleSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France, Yannick JacobAP-HP, WIND department,Paris 75012, France, Aurélien MaireAP-HP, WIND department,Paris 75012, France, Sebastian StröerAP-HP, Hôpital de la Pitié Salpêtrière, Department of Neuroradiology, Paris 75013, France, Didier DormontSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, DMU DIAMENT, Paris 75013, France, Olivier ColliotSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France, Ninon BurgosSorbonne Université, Institut du Cerveau – Paris Brain Institute - ICM, CNRS, Inria, Inserm, AP-HP, Hôpital de la Pitié-Salpêtrière, Paris 75013, France, The Alzheimer’s Disease Neuroimaging Initiative http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Acknowledgement_List.pdf, APPRIMAGE Study Group https://www.aramislab.fr/apprimage

Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient cover file

Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient

2023/05/03
May 2023 issue

Florian KoflerDepartment of Informatics, Technical University Munich, Germany
TranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany
Department of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikumrechts der Isar, Technical University of Munich, Germany
Helmholtz AI, Helmholtz Zentrum München, Germany
et al.

Florian KoflerDepartment of Informatics, Technical University Munich, Germany
TranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany
Department of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikumrechts der Isar, Technical University of Munich, Germany
Helmholtz AI, Helmholtz Zentrum München, Germany
, Ivan EzhovDepartment of Informatics, Technical University Munich, Germany
TranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany
, Fabian IsenseeApplied Computer Vision Lab, Helmholtz Imaging, Germany
Division of Medical Image Computing, German Cancer Research Center (DKFZ), Germany
, Fabian BalsigerSupport Center for Advanced Neuroimaging (SCAN), Institute for Diagnostic and Interventional Neuroradiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland, Christoph BergerDepartment of Informatics, Technical University Munich, Germany, Maximilian KoernerDepartment of Informatics, Technical University Munich, Germany, Beatrice DemirayComputer Aided Medical Procedures (CAMP), Technical University of Munich, Germany, Julia RackersederComputer Aided Medical Procedures (CAMP), Technical University of Munich, Germany
ImFusion GmbH, Munich, Germany
, Johannes PaetzoldDepartment of Informatics, Technical University Munich, Germany
Helmholtz Zentrum München, Germany
Imperial College London
, Hongwei LiDepartment of Informatics, Technical University Munich, Germany
Department of Quantitative Biomedicine, University of Zurich, Switzerland
, Suprosanna ShitDepartment of Informatics, Technical University Munich, Germany
TranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany
, Richard McKinleySupport Center for Advanced Neuroimaging (SCAN), Institute for Diagnostic and Interventional Neuroradiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland, Marie PiraudHelmholtz AI, Helmholtz Zentrum München, Germany, Spyridon BakasCenter for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, Pennsylvania, USA
Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
, Claus ZimmerDepartment of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikumrechts der Isar, Technical University of Munich, Germany, Nassir NavabComputer Aided Medical Procedures (CAMP), Technical University of Munich, Germany, Jan KirschkeDepartment of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikumrechts der Isar, Technical University of Munich, Germany, Benedikt WiestlerTranslaTUM - Central Institute for Translational Cancer Research, Technical University of Munich, Germany
Department of Diagnostic and Interventional Neuroradiology, School of Medicine, Klinikumrechts der Isar, Technical University of Munich, Germany
contributed equally as senior authors
, Bjoern MenzeDepartment of Informatics, Technical University Munich, Germany
Department of Quantitative Biomedicine, University of Zurich, Switzerland
contributed equally as senior authors